2011
J Exp Bot. March 1 ( 2011 )
CLC Genomics Workbench.
http://www.ncbi.nlm.nih.gov/pubmed/21398430
Damage-induced localized hypermutability
Volume 10, Issue 7 April 1 ( 2011 )
CLC Genomics Workbench.
http://www.landesbioscience.com/journals/cc/article/15319/
Screening for antimicrobial resistance genes and virulence factors via genome sequencing
Appl. Environ. Microbiol. doi:10.1128/AEM.02493-10 ( 2011 )
CLC Genomics Workbench.
http://aem.asm.org/cgi/content/abstract/AEM.02493-10v1
Molecular diagnosis for heterogeneous genetic diseases with targeted high-throughput DNA sequencing applied to retinitis pigmentosa
J Med Genet 2011;48:145-151 doi:10.1136/jmg.2010.083568 ( 2011 )
CLC Genomics Workbench.
http://jmg.bmj.com/content/48/3/145.abstract
The maternal and early embryonic transcriptome of the milkweed bug Oncopeltus fasciatus
Ewen-Campen et al. BMC Genomics 2011, 12:61 ( 2011 )
CLC Main Workbench.
http://www.biomedcentral.com/content/pdf/1471-2164-12-61.pdf
Unraveling the Evolution of Auxin Signaling
Plant Physiology 155:209-221 ( 2011 )
CLC DNA Workbench.
http://www.plantphysiol.org/cgi/content/abstract/155/1/209
Genomic Stability over 9 Years of an Isoniazid Resistant Mycobacterium tuberculosis Outbreak Strain in Sweden
PLoS ONE 6(1): e16647. doi:10.1371/journal.pone.0016647 ( 2011 )
CLC Genomics Workbench.
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0016647
Mutation analysis of 18 nephronophthisis associated ciliopathy disease genes using a DNA pooling and next generation sequencing strategy
J Med Genet 2011;48:105-116 doi:10.1136/jmg.2010.082552 ( 2011 )
CLC Genomics Workbench.
http://jmg.bmj.com/content/48/2/105.abstract
Fluorescent-antibody staining assays for human Cryptosporidium detect oocysts of Cryptosporidium molnari from fish
Appl. Environ. Microbiol. doi:10.1128/AEM.02691-10 ( 2011 )
CLC Main Workbench.
http://aem.asm.org/cgi/content/abstract/AEM.02691-10v1
Stimulating denitrification in a stream mesocosm with elemental sulfur as an electron donor
Ecological Engineering, Volume 37, Issue 4, Pages 580-588, doi:10.1016/j.ecoleng.2010.12.00 ( April, 2011 )
CLC DNA Workbench.
http://www.biomedcentral.com/1471-2156/12/23/abstract/
Prevalence and dispersal of a facultative bacterial symbiont associated with an endemic metazoan host
Pedobiologia, Volume 54, Issue 2, 10 March 2011, Pages 153-157 ( March, 2011 )
CLC Main Workbench.
http://www.sciencedirect.com/...
The C1q domain containing proteins of the Mediterranean mussel Mytilus galloprovincialis: A widespread and diverse family of immune-related molecules
"Developmental & Comparative Immunology", Article in Press, (PMID: 21295069)( 2011 )
CLC Genomics Workbench.
http://www.ncbi.nlm.nih.gov/pubmed/21295069
Genetic variability of human metapneumovirus amongst an all ages population in Cambodia between 2007 and 2009
Infection, Genetics and Evolution, Article in Press, (PMID: 21292032) ( February, 2011 )
CLC Main Workbench.
http://www.ncbi.nlm.nih.gov/pubmed/21292032
Expression of three galactinol synthase isoforms in Coffea arabica L. and accumulation of raffinose and stachyose in response to abiotic stresses
Plant Physiology and Biochemistry, Article in Press, (PMID: 21330144) ( February, 2011 )
CLC Main Workbench.
http://www.ncbi.nlm.nih.gov/pubmed/21330144
Genetic diversity of Phytophthora infestans in the Northern-Andean region
BMC Genetics 2011, 12:23doi:10.1186/1471-2156-12-23 ( February, 2011 )
CLC DNA Workbench.
http://www.biomedcentral.com/1471-2156/12/23/abstract/
Genetic characterization of bulgarian rotavirus isolates and detection of rotavirus variants: challenges for the rotavirus vaccine program?
Journal of Medical Virology Volume 83, Issue 2, pages 348?356DOI: 10.1002/jmv.21919 ( February, 2011 )
CLC Main Workbench.
http://onlinelibrary.wiley.com/doi/10.1002/jmv.21919/full
Description of Psychrobacter sanguinis sp. nov. recovered from four clinical specimens in New York State over a 4-year period
EInt J Syst Evol Microbiol (2011); DOI 10.1099/ijs.0.029058-0 ( February, 2011 )
CLC Main Workbench.
http://ijs.sgmjournals.org/cgi/content/abstract/ijs.0.029058-0v1
The Cluster 1 Type VI Secretion System is a Major Virulence Determinant in Burkholderia pseudomallei
Infect. Immun. doi:10.1128/IAI.01218-10 ( February, 2011 )
CLC Genomics Workbench.
http://iai.asm.org/cgi/content/abstract/IAI.01218-10v1
From L-Dopa to Dihydroxyphenylacetaldehyde: A Toxic Biochemical Pathway Plays a Vital Physiological Function in Insects
PLoS ONE 6(1): e16124. doi:10.1371/journal.pone.0016124 ( 2011 )
CLC Main Workbench.
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0016124
Full genome sequencing and analysis of human cytomegalovirus strain JHC isolated from a Korean patient
Virus Research, Article in Press, (PMID: 21255625) ( January, 2011 )
CLC Genomics Workbench.
http://www.ncbi.nlm.nih.gov/pubmed/21255625
Molecular epidemiology of Orientia tsutsugamushi in Cambodia and Central Vietnam reveals a broad region-wide genetic diversity
Infection, Genetics and Evolution, Article in Press, (PMID: 21241829) ( January, 2011 )
CLC Main Workbench.
http://onlinelibrary.wiley.com/doi/10.1111/j.1570-7458.2010.01077.x/full
Draft Genome Sequence of a Dominant Multidrug-resistant Neisseria gonorrhoeae strain TCDC-NG08107 from Sexual Network at High Risk of Acquiring Human Immunodeficiency Virus and Syphilis
J. Bacteriol. doi:10.1128/JB.00007-11 ( January, 2011 )
CLC DNA Workbench.
http://jb.asm.org/cgi/content/abstract/JB.00007-11v1
Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen
PNAS, doi: 10.1073/pnas.1011289108 ( January, 2011 )
CLC Genomics Workbench.
http://www.pnas.org/content/108/6/2504.short
Mayday SeaSight: Combined Analysis of Deep Sequencing and Microarray Data
PLoS ONE 6(1): e16345. doi:10.1371/journal.pone.0016345 ( January, 2011 )
CLC Genomics Workbench.
http://www.plosone.org/article/citationList.action?articleURI=info%3Adoi%2F10.1371%2Fjournal.pone.0016345
Tracing the Domestication of a Biofilm-Forming Bacterium
J. Bacteriol. doi:10.1128/JB.01542-10 ( January, 2011 )
CLC Genomics Workbench.
http://jb.asm.org/cgi/content/abstract/JB.01542-10v1
Aphid genome expression reveals host?symbiont cooperation in the production of amino acids
PNAS, doi: 10.1073/pnas.1013465108 ( January, 2011 )
CLC Genomics Workbench.
http://www.pnas.org/content/108/7/2849.short
OrchidBase: A Collection of Sequences of the Transcriptome Derived from Orchids
Plant Cell Physiol 52 (2): 238-243. doi: 10.1093/pcp/pcq201 ( January, 2011 )
CLC Genomics Workbench.
http://pcp.oxfordjournals.org/content/52/2/238.short
Massive genomic decay in Serratia symbiotica, a recently evolved symbiont of aphids
Genome Biol Evol doi: 10.1093/gbe/evr002 ( January, 2011 )
CLC Genomics Workbench.
http://gbe.oxfordjournals.org/content/early/2011/01/25/gbe.evr002.abstract
Targeted Next-Generation Sequencing for the Molecular Genetic Diagnostics of Cardiomyopathies
doi: 10.1161/CIRCGENETICS.110.958322 ( January, 2011 )
CLC Genomics Workbench.
http://circgenetics.ahajournals.org/content/early/2011/01/14/CIRCGENETICS.110.958322.short
Dynamic growth program regulated by LANCEOLATE enables flexible leaf patterning
doi: 10.1242/dev.056770 ( January, 2011 )
CLC Main Workbench.
http://dev.biologists.org/content/138/4/695.abstract
Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array
BMC Genomics 2011, 12:53doi:10.1186/1471-2164-12-53 ( January, 2011 )
CLC Genomics Workbench.
http://www.biomedcentral.com/1471-2164/12/53/additional/
Variant Plasmodium ovale isolated from a patient infected in Ghana
Malaria Journal 2011, 10:15 doi:10.1186/1475-2875-10-15 ( January, 2011 )
CLC Main Workbench.
http://www.malariajournal.com/content/pdf/1475-2875-10-15.pdf
Disproportionate Distribution of Androgen Receptor Mutations Allocated by the Race/Ethnicity of Prostate Cancer Patients
EuroJournals Publishing, Inc. Vol.49 No.1 (2011), pp.129-131 ( 2011 )
CLC Main Workbench.
http://www.eurojournals.com/EJSR_49_1_13.pdf
De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification
DNA Res doi: 10.1093/dnares/dsq028 ( January, 2011 )
CLC Genomics Workbench.
http://dnaresearch.oxfordjournals.org/content/early/2011/01/07/dnares.dsq028.short
Genome-Wide Polymorphism and Comparative Analyses in the White-Tailed Deer (Odocoileus virginianus): A Model for Conservation Genomics
PLoS ONE 6(1): e15811. doi:10.1371/journal.pone.0015811 ( 2011 )
CLC Genomics Workbench.
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0015811
Characterization of expression dynamics of WOX homeodomain transcription factors during somatic embryogenesis in Vitis vinifera
J. Exp. Bot. (2011) 62 (3): 1089-1101., doi: 10.1093/jxb/erq349 ( 2011 )
CLC Sequence Viewer.
http://jxb.oxfordjournals.org/content/62/3/1089.short
Molecular cloning and characterization of Izumo1 gene from sheep and cashmere goat reveal alternative splicing
MOLECULAR BIOLOGY REPORTS, Volume 38, Number 3, 1995-2006, DOI: 10.1007/s11033-010-0322-9 ( 2011 )
CLC Sequence Viewer.
http://www.springerlink.com/content/l1x64rh555157425/
Multilocus VNTR analysis of Mycobacterium ulcerans strains isolated in Cote d?Ivoire
J Infect Dev Ctries 2011; 5(1):059-063. ( 2011 )
CLC Sequence Viewer.
http://www.jidc.org/index.php/journal/article/viewDownloadInterstitial/1364/496
A novel mutation in MIP associated with congenital nuclear cataract in a Chinese family
Mol Vis. 2011; 17: 70?77. ( 2011 )
CLC Sequence Viewer.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3021572/
Identification at the larval stage of four Curculio species coexisting on oak trees using PCR-RFLP
Entomologia Experimentalis et Applicata Volume 138, Issue 1, pages 77?82, DOI: 10.1111/j.1570-7458.2010.01077.x ( 2011 )
CLC Sequence Viewer.
http://onlinelibrary.wiley.com/doi/10.1111/j.1570-7458.2010.01077.x/full
Rapid identification of mutations in GJC2 in primary lymphoedema using whole exome sequencing combined with linkage analysis with delineation of the phenotype
J Med Genet doi:10.1136/jmg.2010.085563 ( 2011 )
CLC Sequence Viewer.
http://jmg.bmj.com/content/early/2011/01/24/jmg.2010.085563.abstract
Evaluation of a rapid detection method of clarithromycin resistance genes in Mycobacterium avium complex isolates
J. Antimicrob. Chemother. doi: 10.1093/jac/dkq536 ( 2011 )
CLC Sequence Viewer.
http://jac.oxfordjournals.org/content/early/2011/02/03/jac.dkq536.abstract
Bacterial glyoxalase enzymes
PubMed, (PMID: 21310258) ( 2011 )
CLC Sequence Viewer.
http://www.ncbi.nlm.nih.gov/pubmed/21310258
2010
PLoS Genet 6(12): e1001189. doi:10.1371/journal.pgen.1001189 ( December, 2010 )
CLC Genomics Workbench.
http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1001189
A Dual Platform Approach to Transcript Discovery for the Planarian Schmidtea Mediterranea to Establish RNA-Seq for Stem Cell and Regeneration Biology
PLoS ONE 5(12): e15617. doi:10.1371/journal.pone.0015617 ( December, 2010 )
CLC Genomics Workbench for open reading frame analysis.
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0015617
Polymorphisms in the Tlr4 and Tlr5 Gene Are Significantly Associated with Inflammatory Bowel Disease in German Shepherd Dogs
PLoS ONE 5(12): e15740. doi:10.1371/journal.pone.0015740 ( December, 2010 )
CLC DNA Workbench used to identify non-synonymous SNPs.
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0015740
Molecular diagnosis for heterogeneous genetic diseases with targeted high-throughput DNA sequencing applied to retinitis pigmentosa
J. Med. Genet. 47:236-241 doi:10.1136/jmg.2009.070755 ( December, 2010 )
CLC Genomics Workbench.
http://jmg.bmj.com/content/47/4/236.abstract
The mtDNA Mutation Spectrum of the Progeroid Polg Mutator Mouse Includes Abundant Control Region Multimers
Cell Metabolism, Vol. 12, Issue 6, 675-682, 1 ( December, 2010 )
CLC Genomics Workbench used for mtDNA and SNP detection.
http://www.cell.com/cell-metabolism/abstract/S1550-4131(10)00404-3
Arbovirus Detection in Insect Vectors by Rapid, High-Throughput Pyrosequencing
PLoS Negl Trop Dis 4(11): e878. doi:10.1371/journal.pntd.0000878 ( November, 2010 )
CLC Genomics Workbench for transcript analysis and remapping analyses.
http://www.plosntds.org/article/info:doi/10.1371/journal.pntd.0000878
A Molecular Mechanism for Eflornithine Resistance in African Trypanosomes
PLoS Pathog 6(11): e1001204. doi:10.1371/journal.ppat.1001204 ( November, 2010 )
CLC Genomics Workbench.
http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1001204
Systematic detection of putative tumor suppressor genes through the combined use of exome and transcriptome sequencing
Genome Biology 2010, 11:R114 doi:10.1186/gb-2010-11-11-r114 ( November, 2010 )
CLC Genomics Workbench.
http://genomebiology.com/content/pdf/gb-2010-11-11-r114.pdf
Mutation analysis of 18 nephronophthisis associated ciliopathy disease genes using a DNA pooling and next generation sequencing strategy
J. Med. Genet. doi:10.1136/jmg.2010.082552 ( November, 2010 )
CLC Genomics Workbench.
http://jmg.bmj.com/content/early/2010/11/09/jmg.2010.082552.abstract?papetoc
GAMES identifies and annotates mutations in next-generation sequencing projects
Bioinformatics (2011) 27 (1): 9-13. doi: 10.1093/bioinformatics/btq603 ( October, 2010 )
CLC Genomics Workbench.
http://bioinformatics.oxfordjournals.org/content/27/1/9.abstract
The Genome of a Pathogenic Rhodococcus: Cooptive Virulence Underpinned by Key Gene Acquisitions
PLoS Genet 6(9): e1001145. doi:10.1371/journal.pgen.1001145 ( September, 2010 )
CLC Main Workbench.
http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1001145
Ultra High Throughput Sequencing in Human DNA Variation Detection: A Comparative Study on the NDUFA3-PRPF31 Region
PLoS ONE 5(9): e13071. doi:10.1371/journal.pone.0013071 ( September, 2010 )
CLC Genomics Workbench for trimming, assembly and detection of variants.
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0013071
Genome-wide model for the normal eukaryotic DNA replication fork
PNAS, 107: 17674-17679. ( October, 2010 )
CLC Genomics Workbench.
http://www.pnas.org/content/early/2010/09/23/1010178107.abstract
Transcriptomic analyses of xylan degradation by Prevotella bryantii and insights into energy acquisition by xylanolytic Bacteroidetes
The Journal of Biological Chemistry, 285, 30261-30273 ( September, 2010 )
CLC Genomics Workbench used for RNA-seq.
http://www.jbc.org/content/early/2010/07/09/jbc.M110.141788.full.pdf+html
De novo assembly of short sequence reads
Brief Bioinform, 11: 457 - 472. ( September, 2010 )
CLC Genomics Workbench used for de novo assembly.
http://bib.oxfordjournals.org/content/11/5/457.abstract
SNP discovery in the bovine milk transcriptome using RNA-Seq technology
Mammalian Genome, Springerlink.com ( August, 2010 )
CLC Genomics Workbench used for RNA-Seq and SNP discovery analyses.
http://www.springerlink.com/content/8x7222m5k23502kk/fulltext.pdf
Deep sequencing analysis of mutations resulting from the incorporation of dNTP analogs
Nucleic Acids Res., 10.1093/nar/gkq685. ( August, 2010 )
CLC Genomics Workbench for high-throughput sequencing and SNP detection.
http://nar.oxfordjournals.org/content/early/2010/08/06/nar.gkq685.abstract
Genome Sequences of Lactococcus lactis MG1363 (Revised) and NZ9000 and Comparative Physiological Studies
Journal of Bacteriology, p. 5806-5812, Vol. 192, No. 21 ( July, 2010 )
CLC Genomics Workbench.
http://jb.asm.org/cgi/content/abstract/192/21/5806
Fis Is Essential for Capsule Production in Pasteurella multocida and Regulates Expression of Other Important Virulence Factors
PLoS ONE 5(2): e9098. doi:10.1371/journal.pone.0009098 ( February, 2010 )
CLC Genomics Workbench for de novo assembly.
http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1000750
PLUNC Is a Novel Airway Surfactant Protein with Anti-Biofilm Activity
PLoS ONE 5(2): e9098. doi:10.1371/journal.pone.0009098 ( February, 2010 )
CLC Genomics Workbench for alignment.
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0009098
The Giardia lamblia vsp gene repertoire: characteristics, genomic organization, and evolution
BMC Genomics 11:424 ( 2010 )
CLC Genomics Workbench used for alignment.
http://www.biomedcentral.com/content/pdf/1471-2164-11-424.pdf
Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonus spp. Salmonidae)
Molecular Ecology 115?131 ( 2010 )
CLC Genomics Workbench used for mapping.
http://www.sebastien.renaut.com/fr/Publications_files/Renaut_et_al_2010.pdf
The Aspartate-Semialdehyde Dehydrogenase of Edwardsiella ictaluri and Its Use as Balanced-Lethal System in Fish Vaccinology
PLoS ONE 5(12): e15944. doi:10.1371/journal.pone.0015944 ( 2010 )
Sequence alignments were performed using the CLC Free Workbench (CLC Sequence Viewer).
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0015944
Genetic Analysis of Baker's Yeast Msh4-Msh5 Reveals a Threshold Crossover Level for Meiotic Viability
PLoS Genet 6(8): e1001083. doi:10.1371/journal.pgen.1001083 ( 2010 )
CLC Free Workbench (Now CLC Sequence Viewer).
http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1001083
2009
PLoS ONE 4(11): e8082. doi:10.1371/journal.pone.0008082 ( November, 2009 )
CLC Genomics Workbench.
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0008082
CGI-58/ABHD5 is a coenzyme A-dependent lysophosphatidic acid acyltransferase
Journal of Lipid (JLR Papers in Press) Vol. 51( October, 2009 )
CLC Genomics Workbench used for mapping.
http://www.foodscience.rutgers.edu/carman/PDF%20Files/CGI58%20is%20an%20LPAAT-JLR-2010.pdf
Differential Regulation of Type I Interferon and Epidermal Growth Factor Pathways by a Human Respirovirus Virulence Factor
PLoS Pathog 5(9): e1000587. doi:10.1371/journal.ppat.1000587 ( September, 2009 )
CLC Genomics Workbench.
http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1000587
Comparative SNP diversity among four Eucalyptusspecies for genes from secondary metabolite biosynthetic pathways
BMC Genomics 10:452 ( September, 2009 )
CLC Genomics Workbench used for mapping and SNP detection.
http://www.biomedcentral.com/content/pdf/1471-2164-10-452.pdf
Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling
PLoS ONE 4(7): e6323. doi:10.1371/journal.pone.0006323, ( July, 2009 )
CLC NGS Cell (Now CLC Assembly Cell).
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0006323
Evidence of Recombination and Genetic Diversity in Human Rhinoviruses in Children with Acute Respiratory Infection
PLoS ONE 4(7): e6355. doi:10.1371/journal.pone.0006355, ( July, 2009 )
CLC Combined Workbench 3.0 (Now CLC Main Workbench).
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0006355
Microarray-based multicycle-enrichment of genomic subsets for targeted next-generation sequencing
Genome Research, 19: 1616-1621 ( July, 2009 )
CLC Genomics Workbench used for mapping.
http://genome.cshlp.org/content/19/9/1616.full.pdf+html
Managing and Analyzing Next-Generation Sequence Data
PLoS Comput Biol 5(6): e1000369. doi:10.1371/journal.pcbi.1000369 ( June, 2009 )
CLC Genomics Workbench.
http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000369
Genetic Detection and Characterization of Lujo Virus, a New Hemorrhagic Fever?Associated Arenavirus from Southern Africa
PLoS Pathog 5(5): e1000455. doi:10.1371/journal.ppat.1000455 ( May, 2009 )
CLC RNA Workbench for annotation and more.
http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1000455
Recombination between Polioviruses and Co-Circulating Coxsackie A Viruses: Role in the Emergence of Pathogenic Vaccine-Derived Polioviruses
PLoS Pathog 5(5): e1000412. doi:10.1371/journal.ppat.10004124 ( May, 2009 )
CLC Combined Workbench 3.0 for sequence alignment (Now CLC Main Workbench).
http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1000412
Comparative Transcriptional Profiling of Bacillus cereus Sensu Lato Strains during Growth in CO2-Bicarbonate and Aerobic Atmospheres
PLoS ONE 4(3): e4904. doi:10.1371/journal.pone.0004904 ( March, 2009 )
CLC DNA Workbench.
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0004904
Next-generation sequencing and metagenomic analysis: a universal diagnostic tool in plant virology
Molecular Plant Pathology 10(4), 537?545 ( 2009 )
CLC Genomics Workbench used for Contig assembly and de novo assembly.
http://onlinelibrary.wiley.com/doi/10.1111/j.1364-3703.2009.00545.x/pdf
Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line
PNAS 106-6, ( February, 2009 )
CLC Genomics Workbench used for de novo and mapping to reference genome.
http://www.pnas.org/content/106/6/1886.full.pdf+html
Identification and Expression Analysis of Ras Gene in Silkworm, Bombyx mori
PLoS ONE 4(11): e8030. doi:10.1371/journal.pone.0008030 ( 2009 )
CLC Sequence Viewer.
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0008030
Evolutionary History of the HAP2/GCS1 Gene and Sexual Reproduction in Metazoans
PLoS ONE 4(11): e7680. doi:10.1371/journal.pone.0007680 ( 2009 )
Graphic was generated using Version 6.2 of CLC Sequence Viewer.
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0007680
Methylobacterium Genome Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sour
PLoS ONE 4(5): e5584. doi:10.1371/journal.pone.0005584 ( 2009 )
CLC Sequence Viewer.
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005584
2008
Molecular Vision. December 1 ( 2008 )
CLC Genomics Workbench.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2790479/?tool=pmcentrez
The cytoplasmic C2A domain of synaptotagmin shows sequence specific interaction with its own mRNA
Biochem Biophys Res Commun. 2008 Sep 5;373(4):509-14. Epub ( June, 2008 )
CLC RNA Workbench.
http://www.ncbi.nlm.nih.gov/pubmed/18585366
Promoter-Wide Hypermethylation of the Ribosomal RNA Gene Promoter in the Suicide Brain
PLoS ONE 3(5): e2085. doi:10.1371/journal.pone.0002085 ( May 7, 2008 )
CLC Sequence Viewer.
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002085
2007
PLoS ONE 2(12): e1319. doi:10.1371/journal.pone.0001319 ( December, 2007 )
CLC Free Workbench 3.2.2 (Now CLC Sequence Viewer).
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0001319
